Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 AC138028.4-201ENST00000564984 1845 ntBASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.12■□□□□ 0.81
CTDP1Q9Y5B0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 LINC00982-205ENST00000420957 435 ntBASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 MTDHP5-201ENST00000598980 586 ntBASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 AC008667.4-201ENST00000607370 168 ntBASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 AC004790.2-201ENST00000623588 572 ntBASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDP1Q9Y5B0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 GPX1P2-201ENST00000429271 606 ntBASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 VN2R19P-201ENST00000442399 1052 ntBASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 IGHV3-65-201ENST00000523210 341 ntBASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CTDP1Q9Y5B0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTDP1Q9Y5B0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms