Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 AL590787.1-201ENST00000568856 1315 ntBASIC17.52■□□□□ 0.4
LHX3Q9UBR4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 AC098831.1-202ENST00000438821 336 ntBASIC17.52■□□□□ 0.4
LHX3Q9UBR4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 AL356488.2-201ENST00000602755 427 ntBASIC17.52■□□□□ 0.4
LHX3Q9UBR4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LHX3Q9UBR4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
LHX3Q9UBR4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LHX3Q9UBR4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.52■□□□□ 0.39
LHX3Q9UBR4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LHX3Q9UBR4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LHX3Q9UBR4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 AC136632.2-201ENST00000512891 861 ntBASIC17.51■□□□□ 0.39
LHX3Q9UBR4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 AC117500.6-201ENST00000624871 588 ntBASIC17.51■□□□□ 0.39
LHX3Q9UBR4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 AC116353.5-201ENST00000638148 1699 ntBASIC17.51■□□□□ 0.39
LHX3Q9UBR4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LHX3Q9UBR4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 IL9RP2-201ENST00000423948 1312 ntBASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 AL590627.1-203ENST00000421194 1026 ntBASIC17.5■□□□□ 0.39
LHX3Q9UBR4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 IGHV3-22-201ENST00000520721 359 ntBASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX3Q9UBR4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms