Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLCF1Q9UBD9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLCF1Q9UBD9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLCF1Q9UBD9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLCF1Q9UBD9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLCF1Q9UBD9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 GPR89P-201ENST00000407924 1495 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 MIR940-201ENST00000401276 94 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 ACTG1P4-201ENST00000425123 1122 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AL139327.4-201ENST00000612362 153 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AL805961.1-202ENST00000641562 540 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AC046185.3-201ENST00000623228 1824 ntBASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLCF1Q9UBD9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 RPS15P9-201ENST00000494093 319 ntBASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 PGAM5P1-201ENST00000518923 814 ntBASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CLCF1Q9UBD9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms