Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 LYSMD4-203ENST00000378904 2122 ntBASIC16.93■□□□□ 0.3
NDE1Q9NXR1 CYP2T1P-202ENST00000641596 2535 ntBASIC16.93■□□□□ 0.3
NDE1Q9NXR1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.93■□□□□ 0.3
NDE1Q9NXR1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 AC010240.3-201ENST00000607688 395 ntBASIC16.92■□□□□ 0.3
NDE1Q9NXR1 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CR769767.2-201ENST00000622735 460 ntBASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 LINC01311-201ENST00000565162 1445 ntBASIC16.92■□□□□ 0.3
NDE1Q9NXR1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NDE1Q9NXR1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 AL513523.2-202ENST00000427283 2040 ntBASIC16.91■□□□□ 0.3
NDE1Q9NXR1 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 AC092850.2-201ENST00000623821 2697 ntBASIC16.91■□□□□ 0.3
NDE1Q9NXR1 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms