Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 AC104819.1-201ENST00000504587 486 ntBASIC18.69■□□□□ 0.58
SIX2Q9NPC8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX2Q9NPC8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 POM121L3P-201ENST00000419331 1163 ntBASIC18.68■□□□□ 0.58
SIX2Q9NPC8 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 AC099336.1-202ENST00000602961 463 ntBASIC18.68■□□□□ 0.58
SIX2Q9NPC8 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX2Q9NPC8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 AC092068.3-201ENST00000587894 2016 ntBASIC18.67■□□□□ 0.58
SIX2Q9NPC8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SIX2Q9NPC8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 MIR1224-201ENST00000408193 85 ntBASIC18.66■□□□□ 0.58
SIX2Q9NPC8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 NUS1P1-201ENST00000446295 882 ntBASIC18.66■□□□□ 0.58
SIX2Q9NPC8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 AC124947.2-201ENST00000547118 1133 ntBASIC18.66■□□□□ 0.58
SIX2Q9NPC8 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 MIR5100-201ENST00000579544 119 ntBASIC18.66■□□□□ 0.58
SIX2Q9NPC8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms