Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AL353692.3-201ENST00000407031 1396 ntBASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC112698.1-201ENST00000510299 916 ntBASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 VENTXP5-201ENST00000523979 775 ntBASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AL023806.1-201ENST00000603994 1649 ntBASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CLIP4Q8N3C7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLIP4Q8N3C7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLIP4Q8N3C7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 AL138688.1-201ENST00000624851 1594 ntBASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 HLA-J-201ENST00000462773 1622 ntBASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 DDX43P3-201ENST00000441064 443 ntBASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP4Q8N3C7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 FLJ38576-201ENST00000623820 2459 ntBASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.38■□□□□ 0.21
CLIP4Q8N3C7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms