Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 AC104581.1-202ENST00000635932 2618 ntBASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 KRT18P55-202ENST00000578578 1546 ntBASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC88AQ3V6T2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 AL606495.2-201ENST00000605867 535 ntBASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 REXO1L3P-201ENST00000622202 1288 ntBASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 AC008677.1-201ENST00000519230 1561 ntBASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC88AQ3V6T2 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 LINC00304-203ENST00000565008 1864 ntBASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 IGHV3-71-201ENST00000523324 359 ntBASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC88AQ3V6T2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 AC125807.1-201ENST00000483097 614 ntBASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 AC243562.1-201ENST00000560672 389 ntBASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 AKAP8P1-201ENST00000434743 1349 ntBASIC21.12■□□□□ 0.97
CCDC88AQ3V6T2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 COX5BP8-201ENST00000416911 349 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 LINC00982-205ENST00000420957 435 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 MIR6752-201ENST00000618442 71 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms