Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 AC211429.1-201ENST00000415277 523 ntBASIC16.28■□□□□ 0.2
CDH12P55289 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH12P55289 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH12P55289 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH12P55289 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 AC009154.2-201ENST00000621177 724 ntBASIC16.28■□□□□ 0.2
CDH12P55289 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CDH12P55289 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CDH12P55289 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH12P55289 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH12P55289 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH12P55289 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CDH12P55289 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 RNF152P1-201ENST00000397754 604 ntBASIC16.27■□□□□ 0.2
CDH12P55289 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 TSPY12P-201ENST00000421279 868 ntBASIC16.27■□□□□ 0.2
CDH12P55289 TSPY5P-201ENST00000426936 936 ntBASIC16.27■□□□□ 0.2
CDH12P55289 KRT18P38-201ENST00000449496 1282 ntBASIC16.27■□□□□ 0.2
CDH12P55289 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 ZNF444P1-201ENST00000559497 298 ntBASIC16.27■□□□□ 0.2
CDH12P55289 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
CDH12P55289 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CDH12P55289 BX276092.7-203ENST00000637198 1536 ntBASIC16.27■□□□□ 0.2
CDH12P55289 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH12P55289 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH12P55289 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
CDH12P55289 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.19
CDH12P55289 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.27■□□□□ 0.19
CDH12P55289 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CDH12P55289 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH12P55289 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CDH12P55289 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH12P55289 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CDH12P55289 IGHGP-201ENST00000390555 1178 ntBASIC16.26■□□□□ 0.19
CDH12P55289 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.26■□□□□ 0.19
CDH12P55289 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.26■□□□□ 0.19
CDH12P55289 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH12P55289 AP003733.1-201ENST00000491725 852 ntBASIC16.26■□□□□ 0.19
CDH12P55289 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH12P55289 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.26■□□□□ 0.19
CDH12P55289 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.26■□□□□ 0.19
CDH12P55289 AC006011.2-201ENST00000621313 1158 ntBASIC16.26■□□□□ 0.19
CDH12P55289 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CDH12P55289 AC105020.1-201ENST00000435356 2205 ntBASIC16.26■□□□□ 0.19
CDH12P55289 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH12P55289 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms