Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDH6P55285 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH6P55285 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH6P55285 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH6P55285 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CDH6P55285 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CDH6P55285 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH6P55285 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH6P55285 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 IGHV3-47-201ENST00000425060 335 ntBASIC18.15■□□□□ 0.5
CDH6P55285 UPK3BP1-201ENST00000428678 509 ntBASIC18.15■□□□□ 0.5
CDH6P55285 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH6P55285 AC096582.2-201ENST00000510860 516 ntBASIC18.15■□□□□ 0.5
CDH6P55285 AP000867.3-201ENST00000524675 377 ntBASIC18.15■□□□□ 0.5
CDH6P55285 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 AC074051.2-201ENST00000565115 352 ntBASIC18.15■□□□□ 0.5
CDH6P55285 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH6P55285 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.15■□□□□ 0.5
CDH6P55285 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 BNIP3P18-201ENST00000593976 575 ntBASIC18.15■□□□□ 0.5
CDH6P55285 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.15■□□□□ 0.5
CDH6P55285 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.15■□□□□ 0.5
CDH6P55285 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH6P55285 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CDH6P55285 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDH6P55285 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH6P55285 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
CDH6P55285 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.5
CDH6P55285 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
CDH6P55285 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDH6P55285 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
CDH6P55285 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH6P55285 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH6P55285 AC046185.3-201ENST00000623228 1824 ntBASIC18.14■□□□□ 0.5
CDH6P55285 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.14■□□□□ 0.49
CDH6P55285 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH6P55285 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 AC092119.3-201ENST00000612618 583 ntBASIC18.14■□□□□ 0.49
CDH6P55285 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.14■□□□□ 0.49
CDH6P55285 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH6P55285 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH6P55285 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms