Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.98■□□□□ 0.15
RFC3P40938 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.98■□□□□ 0.15
RFC3P40938 AC117500.6-201ENST00000624871 588 ntBASIC15.98■□□□□ 0.15
RFC3P40938 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.98■□□□□ 0.15
RFC3P40938 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
RFC3P40938 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFC3P40938 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RFC3P40938 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.97■□□□□ 0.15
RFC3P40938 KLF4P1-201ENST00000412782 1185 ntBASIC15.97■□□□□ 0.15
RFC3P40938 LAGE3P1-201ENST00000425356 484 ntBASIC15.97■□□□□ 0.15
RFC3P40938 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.97■□□□□ 0.15
RFC3P40938 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.97■□□□□ 0.15
RFC3P40938 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 AC019129.2-201ENST00000609837 1235 ntBASIC15.97■□□□□ 0.15
RFC3P40938 AC141586.5-201ENST00000624546 2050 ntBASIC15.97■□□□□ 0.15
RFC3P40938 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.97■□□□□ 0.15
RFC3P40938 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.97■□□□□ 0.15
RFC3P40938 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.97■□□□□ 0.15
RFC3P40938 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFC3P40938 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.96■□□□□ 0.15
RFC3P40938 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.96■□□□□ 0.15
RFC3P40938 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.96■□□□□ 0.15
RFC3P40938 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.96■□□□□ 0.15
RFC3P40938 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.96■□□□□ 0.15
RFC3P40938 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.96■□□□□ 0.15
RFC3P40938 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.96■□□□□ 0.15
RFC3P40938 AL020989.1-201ENST00000422979 469 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms