Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR574-201ENST00000385209 96 ntBASIC18.38■□□□□ 0.53
BDNFP23560 ELK2BP-201ENST00000415014 1224 ntBASIC18.38■□□□□ 0.53
BDNFP23560 LINC00982-205ENST00000420957 435 ntBASIC18.38■□□□□ 0.53
BDNFP23560 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.38■□□□□ 0.53
BDNFP23560 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.38■□□□□ 0.53
BDNFP23560 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.38■□□□□ 0.53
BDNFP23560 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.38■□□□□ 0.53
BDNFP23560 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.38■□□□□ 0.53
BDNFP23560 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
BDNFP23560 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.38■□□□□ 0.53
BDNFP23560 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.38■□□□□ 0.53
BDNFP23560 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 LYSMD4-203ENST00000378904 2122 ntBASIC18.38■□□□□ 0.53
BDNFP23560 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.37■□□□□ 0.53
BDNFP23560 AC136632.2-201ENST00000512891 861 ntBASIC18.37■□□□□ 0.53
BDNFP23560 UNC93B6-202ENST00000528242 690 ntBASIC18.37■□□□□ 0.53
BDNFP23560 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.37■□□□□ 0.53
BDNFP23560 AL139424.1-201ENST00000607572 797 ntBASIC18.37■□□□□ 0.53
BDNFP23560 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.37■□□□□ 0.53
BDNFP23560 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
BDNFP23560 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 AC133963.1-201ENST00000504166 1679 ntBASIC18.37■□□□□ 0.53
BDNFP23560 AL135999.2-201ENST00000622438 1686 ntBASIC18.37■□□□□ 0.53
BDNFP23560 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
BDNFP23560 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BDNFP23560 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.36■□□□□ 0.53
BDNFP23560 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
BDNFP23560 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
BDNFP23560 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.36■□□□□ 0.53
BDNFP23560 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 ZNF259P1-201ENST00000407656 1365 ntBASIC18.36■□□□□ 0.53
BDNFP23560 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.36■□□□□ 0.53
BDNFP23560 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.36■□□□□ 0.53
BDNFP23560 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.36■□□□□ 0.53
BDNFP23560 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.36■□□□□ 0.53
BDNFP23560 AC145285.3-201ENST00000564603 959 ntBASIC18.36■□□□□ 0.53
BDNFP23560 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.36■□□□□ 0.53
BDNFP23560 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.36■□□□□ 0.53
BDNFP23560 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.36■□□□□ 0.53
BDNFP23560 AL133373.2-201ENST00000623187 2828 ntBASIC18.36■□□□□ 0.53
BDNFP23560 AC005593.1-201ENST00000624894 515 ntBASIC18.36■□□□□ 0.53
BDNFP23560 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BDNFP23560 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
BDNFP23560 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.35■□□□□ 0.53
BDNFP23560 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.35■□□□□ 0.53
BDNFP23560 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.35■□□□□ 0.53
BDNFP23560 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 AC034105.1-201ENST00000563488 319 ntBASIC18.35■□□□□ 0.53
BDNFP23560 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.35■□□□□ 0.53
BDNFP23560 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.35■□□□□ 0.53
BDNFP23560 Z83851.2-201ENST00000609564 659 ntBASIC18.35■□□□□ 0.53
BDNFP23560 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.35■□□□□ 0.53
BDNFP23560 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms