Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL9A1P20849 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL9A1P20849 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.81■□□□□ 0.44
COL9A1P20849 MRPS18AP1-201ENST00000414458 589 ntBASIC17.81■□□□□ 0.44
COL9A1P20849 ADH5P3-201ENST00000433842 1137 ntBASIC17.81■□□□□ 0.44
COL9A1P20849 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 AC069120.2-201ENST00000524091 540 ntBASIC17.81■□□□□ 0.44
COL9A1P20849 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.81■□□□□ 0.44
COL9A1P20849 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
COL9A1P20849 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.81■□□□□ 0.44
COL9A1P20849 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.81■□□□□ 0.44
COL9A1P20849 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL9A1P20849 AC132938.5-201ENST00000624980 1813 ntBASIC17.81■□□□□ 0.44
COL9A1P20849 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 AL353593.2-201ENST00000602529 1483 ntBASIC17.81■□□□□ 0.44
COL9A1P20849 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
COL9A1P20849 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL9A1P20849 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 AL049757.1-201ENST00000616842 1596 ntBASIC17.8■□□□□ 0.44
COL9A1P20849 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.8■□□□□ 0.44
COL9A1P20849 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.8■□□□□ 0.44
COL9A1P20849 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.8■□□□□ 0.44
COL9A1P20849 AC004890.2-204ENST00000481968 304 ntBASIC17.8■□□□□ 0.44
COL9A1P20849 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 AC112191.1-201ENST00000523689 701 ntBASIC17.8■□□□□ 0.44
COL9A1P20849 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.8■□□□□ 0.44
COL9A1P20849 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC17.8■□□□□ 0.44
COL9A1P20849 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.8■□□□□ 0.44
COL9A1P20849 AC106886.1-201ENST00000568660 600 ntBASIC17.8■□□□□ 0.44
COL9A1P20849 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.8■□□□□ 0.44
COL9A1P20849 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.8■□□□□ 0.44
COL9A1P20849 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL9A1P20849 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL9A1P20849 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL9A1P20849 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.79■□□□□ 0.44
COL9A1P20849 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.79■□□□□ 0.44
COL9A1P20849 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 AL592309.1-201ENST00000443127 649 ntBASIC17.79■□□□□ 0.44
COL9A1P20849 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.79■□□□□ 0.44
COL9A1P20849 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.79■□□□□ 0.44
COL9A1P20849 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.79■□□□□ 0.44
COL9A1P20849 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.79■□□□□ 0.44
COL9A1P20849 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.79■□□□□ 0.44
COL9A1P20849 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL9A1P20849 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL9A1P20849 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms