Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.43■□□□□ 0.38
XRCC1P18887 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
XRCC1P18887 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.43■□□□□ 0.38
XRCC1P18887 AC022898.2-201ENST00000616822 1312 ntBASIC17.43■□□□□ 0.38
XRCC1P18887 AC097374.2-201ENST00000618617 1306 ntBASIC17.43■□□□□ 0.38
XRCC1P18887 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
XRCC1P18887 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.43■□□□□ 0.38
XRCC1P18887 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
XRCC1P18887 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
XRCC1P18887 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
XRCC1P18887 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
XRCC1P18887 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
XRCC1P18887 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.42■□□□□ 0.38
XRCC1P18887 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
XRCC1P18887 RCN1P2-201ENST00000398357 915 ntBASIC17.42■□□□□ 0.38
XRCC1P18887 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.42■□□□□ 0.38
XRCC1P18887 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
XRCC1P18887 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.42■□□□□ 0.38
XRCC1P18887 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
XRCC1P18887 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.42■□□□□ 0.38
XRCC1P18887 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.42■□□□□ 0.38
XRCC1P18887 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
XRCC1P18887 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
XRCC1P18887 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
XRCC1P18887 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 AL118508.1-201ENST00000613502 2345 ntBASIC17.41■□□□□ 0.38
XRCC1P18887 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.41■□□□□ 0.38
XRCC1P18887 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.41■□□□□ 0.38
XRCC1P18887 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 AC011467.2-201ENST00000598425 242 ntBASIC17.41■□□□□ 0.38
XRCC1P18887 REXO1L6P-202ENST00000619970 1078 ntBASIC17.41■□□□□ 0.38
XRCC1P18887 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
XRCC1P18887 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 AC018695.7-201ENST00000624587 2492 ntBASIC17.41■□□□□ 0.38
XRCC1P18887 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.41■□□□□ 0.38
XRCC1P18887 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.41■□□□□ 0.38
XRCC1P18887 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
XRCC1P18887 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
XRCC1P18887 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.4■□□□□ 0.38
XRCC1P18887 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
XRCC1P18887 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.4■□□□□ 0.38
XRCC1P18887 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.4■□□□□ 0.38
XRCC1P18887 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
XRCC1P18887 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
XRCC1P18887 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
XRCC1P18887 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
XRCC1P18887 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.4■□□□□ 0.38
XRCC1P18887 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms