Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
APOEP02649 AL645608.8-201ENST00000606034 2086 ntBASIC18.3■□□□□ 0.52
APOEP02649 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
APOEP02649 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 SIRPAP1-201ENST00000448467 1770 ntBASIC18.3■□□□□ 0.52
APOEP02649 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 AKR1C7P-201ENST00000305623 895 ntBASIC18.3■□□□□ 0.52
APOEP02649 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
APOEP02649 RBM17P3-201ENST00000417687 1192 ntBASIC18.3■□□□□ 0.52
APOEP02649 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.3■□□□□ 0.52
APOEP02649 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.3■□□□□ 0.52
APOEP02649 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
APOEP02649 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
APOEP02649 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 IGHV3-52-201ENST00000519770 353 ntBASIC18.29■□□□□ 0.52
APOEP02649 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.29■□□□□ 0.52
APOEP02649 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 AC008608.2-201ENST00000606089 416 ntBASIC18.29■□□□□ 0.52
APOEP02649 AP001269.4-201ENST00000609611 512 ntBASIC18.29■□□□□ 0.52
APOEP02649 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.29■□□□□ 0.52
APOEP02649 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
APOEP02649 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.29■□□□□ 0.52
APOEP02649 AC139713.2-201ENST00000641328 2723 ntBASIC18.29■□□□□ 0.52
APOEP02649 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.28■□□□□ 0.52
APOEP02649 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
APOEP02649 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.28■□□□□ 0.52
APOEP02649 AC106795.1-205ENST00000512851 1056 ntBASIC18.28■□□□□ 0.52
APOEP02649 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.28■□□□□ 0.52
APOEP02649 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.28■□□□□ 0.52
APOEP02649 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.28■□□□□ 0.52
APOEP02649 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
APOEP02649 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.28■□□□□ 0.52
APOEP02649 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.28■□□□□ 0.52
APOEP02649 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.28■□□□□ 0.52
APOEP02649 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
APOEP02649 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
APOEP02649 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms