Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.38■□□□□ 0.37
PDGFBP01127 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
PDGFBP01127 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.38■□□□□ 0.37
PDGFBP01127 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.38■□□□□ 0.37
PDGFBP01127 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.38■□□□□ 0.37
PDGFBP01127 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.38■□□□□ 0.37
PDGFBP01127 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 AL161645.1-201ENST00000622716 1255 ntBASIC17.38■□□□□ 0.37
PDGFBP01127 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
PDGFBP01127 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.38■□□□□ 0.37
PDGFBP01127 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDGFBP01127 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PDGFBP01127 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 AC022144.1-201ENST00000602255 1580 ntBASIC17.37■□□□□ 0.37
PDGFBP01127 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PDGFBP01127 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PDGFBP01127 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.37■□□□□ 0.37
PDGFBP01127 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.37■□□□□ 0.37
PDGFBP01127 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 AC116407.2-201ENST00000613639 860 ntBASIC17.37■□□□□ 0.37
PDGFBP01127 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.37■□□□□ 0.37
PDGFBP01127 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFBP01127 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.37■□□□□ 0.37
PDGFBP01127 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFBP01127 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 HMGA1P7-201ENST00000406908 502 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 MIR1909-201ENST00000411312 80 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 RPS2P32-201ENST00000439199 892 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.36■□□□□ 0.37
PDGFBP01127 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.36■□□□□ 0.37
PDGFBP01127 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.36■□□□□ 0.37
PDGFBP01127 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.36■□□□□ 0.37
PDGFBP01127 AL132655.2-201ENST00000596276 594 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFBP01127 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 AC073592.8-201ENST00000624126 511 ntBASIC17.36■□□□□ 0.37
PDGFBP01127 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PDGFBP01127 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.36■□□□□ 0.37
PDGFBP01127 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFBP01127 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.35■□□□□ 0.37
PDGFBP01127 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFBP01127 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFBP01127 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFBP01127 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.35■□□□□ 0.37
PDGFBP01127 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PDGFBP01127 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.35■□□□□ 0.37
PDGFBP01127 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFBP01127 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms