Protein–RNA interactions for Protein: O75841

UPK1B, Uroplakin-1b, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1BO75841 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.21■□□□□ 0.02
UPK1BO75841 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
UPK1BO75841 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
UPK1BO75841 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.2■□□□□ 0.02
UPK1BO75841 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.2■□□□□ 0.02
UPK1BO75841 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.2■□□□□ 0.02
UPK1BO75841 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
UPK1BO75841 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 AC063926.3-201ENST00000624734 5658 ntBASIC15.2■□□□□ 0.02
UPK1BO75841 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
UPK1BO75841 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC15.2■□□□□ 0.02
UPK1BO75841 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 DBI-210ENST00000542275 757 ntTSL 5 BASIC15.2■□□□□ 0.02
UPK1BO75841 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC15.2■□□□□ 0.02
UPK1BO75841 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC15.2■□□□□ 0.02
UPK1BO75841 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.2■□□□□ 0.02
UPK1BO75841 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.2■□□□□ 0.02
UPK1BO75841 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 AC093525.9-201ENST00000624961 1746 ntBASIC15.2■□□□□ 0.02
UPK1BO75841 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
UPK1BO75841 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.2■□□□□ 0.02
UPK1BO75841 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
UPK1BO75841 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.19■□□□□ 0.02
UPK1BO75841 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CICP13-201ENST00000422015 2789 ntBASIC15.19■□□□□ 0.02
UPK1BO75841 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
UPK1BO75841 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.19■□□□□ 0.02
UPK1BO75841 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 AC006538.1-201ENST00000567905 1585 ntBASIC15.19■□□□□ 0.02
UPK1BO75841 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.19■□□□□ 0.02
UPK1BO75841 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UPK1BO75841 AC013268.4-201ENST00000637413 2228 ntBASIC15.19■□□□□ 0.02
UPK1BO75841 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 HLA-A-202ENST00000376806 1854 ntBASIC15.18■□□□□ 0.02
UPK1BO75841 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.18■□□□□ 0.02
UPK1BO75841 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
UPK1BO75841 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
UPK1BO75841 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
UPK1BO75841 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.18■□□□□ 0.02
UPK1BO75841 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
UPK1BO75841 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms