Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1BO60663 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1BO60663 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1BO60663 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LMX1BO60663 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
LMX1BO60663 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.35■□□□□ 0.05
LMX1BO60663 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 AL022342.1-201ENST00000400363 863 ntBASIC15.35■□□□□ 0.05
LMX1BO60663 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 TOB2P1-201ENST00000469761 992 ntBASIC15.35■□□□□ 0.05
LMX1BO60663 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 AC112698.1-201ENST00000510299 916 ntBASIC15.35■□□□□ 0.05
LMX1BO60663 FOSL1P1-201ENST00000511041 816 ntBASIC15.35■□□□□ 0.05
LMX1BO60663 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1BO60663 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1BO60663 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1BO60663 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1BO60663 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 LYSMD4-203ENST00000378904 2122 ntBASIC15.34■□□□□ 0.05
LMX1BO60663 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 TSPY12P-201ENST00000421279 868 ntBASIC15.34■□□□□ 0.05
LMX1BO60663 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1BO60663 AC104819.1-201ENST00000504587 486 ntBASIC15.34■□□□□ 0.05
LMX1BO60663 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1BO60663 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 AC009154.2-201ENST00000621177 724 ntBASIC15.34■□□□□ 0.05
LMX1BO60663 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1BO60663 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms