Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SMIM28A0A1B0GU29 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMIM28A0A1B0GU29 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SMIM28A0A1B0GU29 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SMIM28A0A1B0GU29 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMIM28A0A1B0GU29 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 MIR4751-201ENST00000578027 74 ntBASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 GGTLC5P-201ENST00000617623 998 ntBASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 AC018470.1-201ENST00000624790 3129 ntBASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMIM28A0A1B0GU29 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 AC006538.3-201ENST00000612495 578 ntBASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 PI4KAP1-204ENST00000612579 1703 ntBASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.63■□□□□ 0.57
SMIM28A0A1B0GU29 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 KRT18P13-201ENST00000400056 1290 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 MRPL20P1-201ENST00000400819 433 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 BX842568.4-201ENST00000421222 227 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 HCG4B-203ENST00000450128 991 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 AC092865.5-201ENST00000545435 363 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 AC040169.1-201ENST00000565382 521 ntBASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SMIM28A0A1B0GU29 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms