Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 RPS15P9-201ENST00000494093 319 ntBASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.16■□□□□ 0.82
CTDP1Q9Y5B0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 AC023274.1-201ENST00000418278 595 ntBASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 UPF3AP3-201ENST00000420996 769 ntBASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 AL691403.2-201ENST00000618460 490 ntBASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTDP1Q9Y5B0 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.14■□□□□ 0.82
CTDP1Q9Y5B0 AC104581.1-202ENST00000635932 2618 ntBASIC20.14■□□□□ 0.82
CTDP1Q9Y5B0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 AC005104.2-201ENST00000427818 678 ntBASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTDP1Q9Y5B0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 YBX2P1-201ENST00000394192 760 ntBASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 AC108073.2-201ENST00000464002 357 ntBASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CTDP1Q9Y5B0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms