Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.86■■□□□ 1.09
RTCBQ9Y3I0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
RTCBQ9Y3I0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.86■■□□□ 1.09
RTCBQ9Y3I0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RTCBQ9Y3I0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RTCBQ9Y3I0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 AP000997.3-201ENST00000623333 2250 ntBASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 RBPMS2P1-201ENST00000437762 623 ntBASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 AC005225.4-201ENST00000557330 545 ntBASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 DUX4L17-201ENST00000557360 1267 ntBASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.85■■□□□ 1.09
RTCBQ9Y3I0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 UGT1A2P-201ENST00000454886 866 ntBASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 AC125807.1-201ENST00000483097 614 ntBASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 AC107918.2-201ENST00000530817 355 ntBASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.84■■□□□ 1.09
RTCBQ9Y3I0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 REXO1L9P-201ENST00000604264 2108 ntBASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTCBQ9Y3I0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.83■■□□□ 1.08
RTCBQ9Y3I0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTCBQ9Y3I0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTCBQ9Y3I0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RTCBQ9Y3I0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
RTCBQ9Y3I0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 SPCS2P4-201ENST00000436160 681 ntBASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 AC140878.1-201ENST00000565277 250 ntBASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 MIR4515-201ENST00000584082 81 ntBASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTCBQ9Y3I0 FO538757.1-201ENST00000623083 1397 ntBASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms