Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 BCL2-203ENST00000589955 5011 ntBASIC17.4■□□□□ 0.38
TREX1Q9NSU2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 MIR1224-201ENST00000408193 85 ntBASIC17.4■□□□□ 0.38
TREX1Q9NSU2 KLF4P1-201ENST00000412782 1185 ntBASIC17.4■□□□□ 0.38
TREX1Q9NSU2 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 AP000867.4-201ENST00000641616 219 ntBASIC17.4■□□□□ 0.38
TREX1Q9NSU2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 AC092053.1-201ENST00000605787 1936 ntBASIC17.4■□□□□ 0.38
TREX1Q9NSU2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
TREX1Q9NSU2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
TREX1Q9NSU2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.39■□□□□ 0.38
TREX1Q9NSU2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
TREX1Q9NSU2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.39■□□□□ 0.37
TREX1Q9NSU2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TREX1Q9NSU2 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms