Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
UBQLN3Q9H347 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
UBQLN3Q9H347 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 INTS4P1-201ENST00000438455 1935 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 AKR1C7P-201ENST00000305623 895 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 AC096633.1-201ENST00000422446 749 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 AL591684.3-201ENST00000605187 298 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 REXO1L6P-202ENST00000619970 1078 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 LINC00304-203ENST00000565008 1864 ntBASIC16.2■□□□□ 0.18
UBQLN3Q9H347 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.2■□□□□ 0.18
UBQLN3Q9H347 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CROCCP2-202ENST00000412962 2773 ntBASIC16.19■□□□□ 0.18
UBQLN3Q9H347 AC099398.1-201ENST00000567919 2776 ntBASIC16.19■□□□□ 0.18
UBQLN3Q9H347 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 AD000864.1-201ENST00000624076 2295 ntBASIC16.19■□□□□ 0.18
UBQLN3Q9H347 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
UBQLN3Q9H347 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
UBQLN3Q9H347 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms