Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 AL020989.1-201ENST00000422979 469 ntBASIC17.35■□□□□ 0.37
VPS35Q96QK1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 SCARNA2-201ENST00000458748 420 ntBASIC17.35■□□□□ 0.37
VPS35Q96QK1 STK19B-204ENST00000512515 211 ntBASIC17.35■□□□□ 0.37
VPS35Q96QK1 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 AC009336.1-201ENST00000608941 1553 ntBASIC17.35■□□□□ 0.37
VPS35Q96QK1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 AL356309.3-201ENST00000624132 1934 ntBASIC17.35■□□□□ 0.37
VPS35Q96QK1 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS35Q96QK1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS35Q96QK1 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS35Q96QK1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
VPS35Q96QK1 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS35Q96QK1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS35Q96QK1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
VPS35Q96QK1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.33■□□□□ 0.37
VPS35Q96QK1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.33■□□□□ 0.37
VPS35Q96QK1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
VPS35Q96QK1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 AC079781.3-201ENST00000449110 356 ntBASIC17.33■□□□□ 0.36
VPS35Q96QK1 PRYP5-201ENST00000451909 266 ntBASIC17.33■□□□□ 0.36
VPS35Q96QK1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 AL031008.1-201ENST00000619963 541 ntBASIC17.33■□□□□ 0.36
VPS35Q96QK1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VPS35Q96QK1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms