Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLIP3Q96DZ5 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
CLIP3Q96DZ5 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AP005117.1-201ENST00000584346 1413 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AL031284.1-201ENST00000419297 478 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AC007967.3-201ENST00000434308 558 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 FGFR3P6-201ENST00000457012 610 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AL096828.2-201ENST00000567259 1965 ntBASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP3Q96DZ5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 AL590627.1-203ENST00000421194 1026 ntBASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 AP000347.1-202ENST00000435868 847 ntBASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 RNPS1P1-201ENST00000507437 918 ntBASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 AC093677.2-201ENST00000600169 1863 ntBASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CLIP3Q96DZ5 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AC148477.8-201ENST00000624298 468 ntBASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms