Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AC026471.1-201ENST00000564629 3026 ntBASIC20.62■□□□□ 0.89
NKX2-3Q8TAU0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 SIGLEC16-201ENST00000599858 1437 ntBASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AC009336.1-201ENST00000608941 1553 ntBASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 CYMP-203ENST00000474680 1263 ntBASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.61■□□□□ 0.89
NKX2-3Q8TAU0 AL645608.8-201ENST00000606034 2086 ntBASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 RPS2P1-201ENST00000434010 821 ntBASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 OR7E14P-202ENST00000530490 1290 ntBASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 CROCCP2-202ENST00000412962 2773 ntBASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NKX2-3Q8TAU0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 RFPL4AP1-201ENST00000530883 850 ntBASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.59■□□□□ 0.89
NKX2-3Q8TAU0 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 KLF4P1-201ENST00000412782 1185 ntBASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 METTL21AP1-201ENST00000438852 635 ntBASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms