Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC23■■□□□ 1.27
USP54Q70EL1 FAM86C2P-203ENST00000528684 1004 ntBASIC23■■□□□ 1.27
USP54Q70EL1 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC23■■□□□ 1.27
USP54Q70EL1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
USP54Q70EL1 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
USP54Q70EL1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
USP54Q70EL1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC22.99■■□□□ 1.27
USP54Q70EL1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC22.99■■□□□ 1.27
USP54Q70EL1 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
USP54Q70EL1 AQP6-203ENST00000551733 849 ntTSL 3 BASIC22.99■■□□□ 1.27
USP54Q70EL1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.99■■□□□ 1.27
USP54Q70EL1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP54Q70EL1 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC22.98■■□□□ 1.27
USP54Q70EL1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.98■■□□□ 1.27
USP54Q70EL1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.98■■□□□ 1.27
USP54Q70EL1 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC22.98■■□□□ 1.27
USP54Q70EL1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
USP54Q70EL1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.98■■□□□ 1.27
USP54Q70EL1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC22.98■■□□□ 1.27
USP54Q70EL1 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC22.98■■□□□ 1.27
USP54Q70EL1 MTRF1LP2-201ENST00000506027 1122 ntBASIC22.98■■□□□ 1.27
USP54Q70EL1 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC22.98■■□□□ 1.27
USP54Q70EL1 AC091167.2-201ENST00000579581 588 ntBASIC22.98■■□□□ 1.27
USP54Q70EL1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP54Q70EL1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC22.97■■□□□ 1.27
USP54Q70EL1 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC22.97■■□□□ 1.27
USP54Q70EL1 WDR53-203ENST00000429115 683 ntTSL 2 BASIC22.97■■□□□ 1.27
USP54Q70EL1 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC22.97■■□□□ 1.27
USP54Q70EL1 CCDC74BP1-201ENST00000508880 1123 ntBASIC22.97■■□□□ 1.27
USP54Q70EL1 AL512356.2-201ENST00000546955 174 ntBASIC22.97■■□□□ 1.27
USP54Q70EL1 VPS29-207ENST00000549970 818 ntTSL 3 BASIC22.97■■□□□ 1.27
USP54Q70EL1 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC22.97■■□□□ 1.27
USP54Q70EL1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC22.97■■□□□ 1.27
USP54Q70EL1 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC22.97■■□□□ 1.27
USP54Q70EL1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC22.97■■□□□ 1.27
USP54Q70EL1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC22.97■■□□□ 1.27
USP54Q70EL1 CNN2P2-201ENST00000443536 909 ntBASIC22.97■■□□□ 1.27
USP54Q70EL1 CNN2P3-201ENST00000450201 906 ntBASIC22.97■■□□□ 1.27
USP54Q70EL1 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC22.97■■□□□ 1.27
USP54Q70EL1 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP54Q70EL1 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC22.97■■□□□ 1.27
USP54Q70EL1 AL136317.3-201ENST00000618497 906 ntBASIC22.97■■□□□ 1.27
USP54Q70EL1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC22.96■■□□□ 1.27
USP54Q70EL1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
USP54Q70EL1 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
USP54Q70EL1 WASH6P-202ENST00000359512 1437 ntBASIC22.96■■□□□ 1.27
USP54Q70EL1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 WRB-204ENST00000398753 699 ntTSL 3 BASIC22.96■■□□□ 1.27
USP54Q70EL1 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC22.96■■□□□ 1.27
USP54Q70EL1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC22.96■■□□□ 1.27
USP54Q70EL1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC22.96■■□□□ 1.27
USP54Q70EL1 AL161645.1-201ENST00000622716 1255 ntBASIC22.96■■□□□ 1.27
USP54Q70EL1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP54Q70EL1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
USP54Q70EL1 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC22.96■■□□□ 1.27
USP54Q70EL1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.96■■□□□ 1.27
USP54Q70EL1 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP54Q70EL1 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP54Q70EL1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC22.95■■□□□ 1.26
USP54Q70EL1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC22.95■■□□□ 1.26
USP54Q70EL1 AC069262.1-201ENST00000539058 672 ntBASIC22.95■■□□□ 1.26
USP54Q70EL1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC22.95■■□□□ 1.26
USP54Q70EL1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP54Q70EL1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP54Q70EL1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC22.95■■□□□ 1.26
USP54Q70EL1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms