Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PPP4R4Q6NUP7 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 AC006011.2-201ENST00000621313 1158 ntBASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 FLJ38576-201ENST00000623820 2459 ntBASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 AC073508.3-201ENST00000619697 1419 ntBASIC16.79■□□□□ 0.28
PPP4R4Q6NUP7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 LINC00304-203ENST00000565008 1864 ntBASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AP000523.1-201ENST00000398242 1049 ntBASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC117947.1-201ENST00000427448 529 ntBASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 DUX4L26-201ENST00000489078 1255 ntBASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.78■□□□□ 0.28
PPP4R4Q6NUP7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 AC104076.2-201ENST00000448912 469 ntBASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 YBX1P2-201ENST00000489612 999 ntBASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PPP4R4Q6NUP7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.77■□□□□ 0.27
PPP4R4Q6NUP7 AC099343.3-201ENST00000605834 2503 ntBASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms