Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.26■□□□□ 0.51
HDAC4P56524 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC4P56524 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC4P56524 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.26■□□□□ 0.51
HDAC4P56524 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC4P56524 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HDAC4P56524 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.26■□□□□ 0.51
HDAC4P56524 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC4P56524 AC132938.5-201ENST00000624980 1813 ntBASIC18.26■□□□□ 0.51
HDAC4P56524 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC4P56524 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC4P56524 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC4P56524 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.25■□□□□ 0.51
HDAC4P56524 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HDAC4P56524 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 MYCLP1-201ENST00000372451 1075 ntBASIC18.25■□□□□ 0.51
HDAC4P56524 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC4P56524 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.25■□□□□ 0.51
HDAC4P56524 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.25■□□□□ 0.51
HDAC4P56524 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.25■□□□□ 0.51
HDAC4P56524 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.25■□□□□ 0.51
HDAC4P56524 AC111152.3-201ENST00000569699 673 ntBASIC18.25■□□□□ 0.51
HDAC4P56524 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.25■□□□□ 0.51
HDAC4P56524 STK25P1-201ENST00000585406 838 ntBASIC18.25■□□□□ 0.51
HDAC4P56524 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.25■□□□□ 0.51
HDAC4P56524 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HDAC4P56524 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HDAC4P56524 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC4P56524 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC4P56524 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HDAC4P56524 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.24■□□□□ 0.51
HDAC4P56524 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
HDAC4P56524 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC4P56524 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
HDAC4P56524 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 PKD1P1-201ENST00000458669 6805 ntBASIC18.24■□□□□ 0.51
HDAC4P56524 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.24■□□□□ 0.51
HDAC4P56524 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.24■□□□□ 0.51
HDAC4P56524 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.24■□□□□ 0.51
HDAC4P56524 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HDAC4P56524 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.24■□□□□ 0.51
HDAC4P56524 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC4P56524 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.24■□□□□ 0.51
HDAC4P56524 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC4P56524 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HDAC4P56524 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC4P56524 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC4P56524 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
HDAC4P56524 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC4P56524 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
HDAC4P56524 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HDAC4P56524 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.23■□□□□ 0.51
HDAC4P56524 PMPCAP1-201ENST00000508114 1576 ntBASIC18.23■□□□□ 0.51
HDAC4P56524 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HDAC4P56524 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC4P56524 KRT16P4-201ENST00000453883 522 ntBASIC18.23■□□□□ 0.51
HDAC4P56524 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.23■□□□□ 0.51
HDAC4P56524 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.23■□□□□ 0.51
HDAC4P56524 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.23■□□□□ 0.51
HDAC4P56524 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms