Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC24.72■■□□□ 1.55
CLTCL1P53675 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC24.72■■□□□ 1.55
CLTCL1P53675 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC24.72■■□□□ 1.55
CLTCL1P53675 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC24.72■■□□□ 1.55
CLTCL1P53675 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
CLTCL1P53675 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 KRT18P32-201ENST00000424695 1287 ntBASIC24.72■■□□□ 1.55
CLTCL1P53675 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC24.72■■□□□ 1.55
CLTCL1P53675 AC026120.1-201ENST00000611536 926 ntBASIC24.72■■□□□ 1.55
CLTCL1P53675 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC24.72■■□□□ 1.55
CLTCL1P53675 AL645728.2-201ENST00000641974 660 ntBASIC24.72■■□□□ 1.55
CLTCL1P53675 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLTCL1P53675 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC24.71■■□□□ 1.55
CLTCL1P53675 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 AC133963.1-201ENST00000504166 1679 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC24.71■■□□□ 1.55
CLTCL1P53675 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CLTCL1P53675 MIR770-201ENST00000390219 98 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 SPDYE11-202ENST00000450699 704 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 SPDYE9P-201ENST00000570642 692 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 MIR3197-201ENST00000582241 73 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 SPDYE10P-202ENST00000612005 668 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 SPDYE8P-202ENST00000612377 668 ntBASIC24.71■■□□□ 1.55
CLTCL1P53675 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC24.71■■□□□ 1.55
CLTCL1P53675 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC24.71■■□□□ 1.55
CLTCL1P53675 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC24.7■■□□□ 1.55
CLTCL1P53675 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
CLTCL1P53675 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC24.7■■□□□ 1.54
CLTCL1P53675 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CLTCL1P53675 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC24.7■■□□□ 1.54
CLTCL1P53675 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CLTCL1P53675 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC24.7■■□□□ 1.54
CLTCL1P53675 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CLTCL1P53675 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
CLTCL1P53675 AC011467.4-201ENST00000594891 528 ntBASIC24.7■■□□□ 1.54
CLTCL1P53675 Z92544.3-201ENST00000624747 417 ntBASIC24.7■■□□□ 1.54
CLTCL1P53675 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CLTCL1P53675 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
CLTCL1P53675 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 AC002056.1-201ENST00000395613 760 ntBASIC24.69■■□□□ 1.54
CLTCL1P53675 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC24.69■■□□□ 1.54
CLTCL1P53675 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 RARRES2P8-201ENST00000566335 367 ntBASIC24.69■■□□□ 1.54
CLTCL1P53675 AL390955.2-201ENST00000603032 514 ntBASIC24.69■■□□□ 1.54
CLTCL1P53675 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
CLTCL1P53675 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLTCL1P53675 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC24.69■■□□□ 1.54
CLTCL1P53675 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC24.69■■□□□ 1.54
CLTCL1P53675 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC24.69■■□□□ 1.54
CLTCL1P53675 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
CLTCL1P53675 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
CLTCL1P53675 BCRP1-201ENST00000444246 691 ntBASIC24.68■■□□□ 1.54
CLTCL1P53675 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
CLTCL1P53675 AC069335.1-201ENST00000489972 472 ntBASIC24.68■■□□□ 1.54
CLTCL1P53675 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
CLTCL1P53675 LINC00628-201ENST00000628516 1289 ntBASIC24.68■■□□□ 1.54
CLTCL1P53675 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 AC135050.7-201ENST00000624508 2218 ntBASIC24.68■■□□□ 1.54
CLTCL1P53675 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 EGFEM1P-202ENST00000431685 1563 ntBASIC24.68■■□□□ 1.54
CLTCL1P53675 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC24.68■■□□□ 1.54
CLTCL1P53675 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CLTCL1P53675 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLTCL1P53675 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms