Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.97■□□□□ 0.31
HNF4AP41235 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.97■□□□□ 0.31
HNF4AP41235 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HNF4AP41235 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HNF4AP41235 LYSMD4-203ENST00000378904 2122 ntBASIC16.97■□□□□ 0.31
HNF4AP41235 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HNF4AP41235 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
HNF4AP41235 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HNF4AP41235 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
HNF4AP41235 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.96■□□□□ 0.31
HNF4AP41235 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
HNF4AP41235 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HNF4AP41235 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.96■□□□□ 0.31
HNF4AP41235 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 HCG4P8-203ENST00000443049 980 ntBASIC16.96■□□□□ 0.31
HNF4AP41235 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.96■□□□□ 0.31
HNF4AP41235 MINOS1P3-201ENST00000457048 203 ntBASIC16.96■□□□□ 0.31
HNF4AP41235 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.96■□□□□ 0.31
HNF4AP41235 AC074051.2-201ENST00000565115 352 ntBASIC16.96■□□□□ 0.31
HNF4AP41235 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.96■□□□□ 0.31
HNF4AP41235 Z69720.1-201ENST00000601483 472 ntBASIC16.96■□□□□ 0.31
HNF4AP41235 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.96■□□□□ 0.31
HNF4AP41235 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
HNF4AP41235 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
HNF4AP41235 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
HNF4AP41235 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
HNF4AP41235 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HNF4AP41235 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 AC009053.2-201ENST00000563701 2365 ntBASIC16.95■□□□□ 0.3
HNF4AP41235 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
HNF4AP41235 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HNF4AP41235 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HNF4AP41235 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HNF4AP41235 FAM220CP-201ENST00000395253 831 ntBASIC16.95■□□□□ 0.3
HNF4AP41235 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 AC103564.2-201ENST00000432853 1299 ntBASIC16.95■□□□□ 0.3
HNF4AP41235 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.95■□□□□ 0.3
HNF4AP41235 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.95■□□□□ 0.3
HNF4AP41235 IGHV3-52-201ENST00000519770 353 ntBASIC16.95■□□□□ 0.3
HNF4AP41235 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
HNF4AP41235 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.95■□□□□ 0.3
HNF4AP41235 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.95■□□□□ 0.3
HNF4AP41235 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
HNF4AP41235 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.95■□□□□ 0.3
HNF4AP41235 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.95■□□□□ 0.3
HNF4AP41235 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HNF4AP41235 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.95■□□□□ 0.3
HNF4AP41235 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HNF4AP41235 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.95■□□□□ 0.3
HNF4AP41235 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.94■□□□□ 0.3
HNF4AP41235 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HNF4AP41235 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.94■□□□□ 0.3
HNF4AP41235 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HNF4AP41235 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HNF4AP41235 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HNF4AP41235 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HNF4AP41235 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
HNF4AP41235 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HNF4AP41235 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HNF4AP41235 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms