Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.63■□□□□ 0.73
CIITAP33076 AC079776.4-201ENST00000511039 504 ntBASIC19.63■□□□□ 0.73
CIITAP33076 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 IGHV3-22-201ENST00000520721 359 ntBASIC19.63■□□□□ 0.73
CIITAP33076 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CIITAP33076 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
CIITAP33076 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.62■□□□□ 0.73
CIITAP33076 ELK2BP-201ENST00000415014 1224 ntBASIC19.62■□□□□ 0.73
CIITAP33076 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.62■□□□□ 0.73
CIITAP33076 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.62■□□□□ 0.73
CIITAP33076 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.62■□□□□ 0.73
CIITAP33076 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CIITAP33076 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CIITAP33076 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.62■□□□□ 0.73
CIITAP33076 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CIITAP33076 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
CIITAP33076 BCL2-203ENST00000589955 5011 ntBASIC19.61■□□□□ 0.73
CIITAP33076 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 IL9RP2-201ENST00000423948 1312 ntBASIC19.61■□□□□ 0.73
CIITAP33076 AL590787.1-201ENST00000568856 1315 ntBASIC19.61■□□□□ 0.73
CIITAP33076 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 SLC25A1P3-201ENST00000395415 828 ntBASIC19.61■□□□□ 0.73
CIITAP33076 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.61■□□□□ 0.73
CIITAP33076 AC136632.2-201ENST00000512891 861 ntBASIC19.61■□□□□ 0.73
CIITAP33076 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.61■□□□□ 0.73
CIITAP33076 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.61■□□□□ 0.73
CIITAP33076 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.61■□□□□ 0.73
CIITAP33076 AL356488.2-201ENST00000602755 427 ntBASIC19.61■□□□□ 0.73
CIITAP33076 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.61■□□□□ 0.73
CIITAP33076 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.61■□□□□ 0.73
CIITAP33076 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CIITAP33076 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.6■□□□□ 0.73
CIITAP33076 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CIITAP33076 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CIITAP33076 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.6■□□□□ 0.73
CIITAP33076 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.6■□□□□ 0.73
CIITAP33076 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 AL590627.1-203ENST00000421194 1026 ntBASIC19.6■□□□□ 0.73
CIITAP33076 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CIITAP33076 AC098831.1-202ENST00000438821 336 ntBASIC19.6■□□□□ 0.73
CIITAP33076 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 AC092910.1-201ENST00000482027 1129 ntBASIC19.6■□□□□ 0.73
CIITAP33076 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.6■□□□□ 0.73
CIITAP33076 PGM5P2-202ENST00000637225 1043 ntBASIC19.6■□□□□ 0.73
CIITAP33076 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CIITAP33076 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CIITAP33076 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CIITAP33076 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CIITAP33076 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.59■□□□□ 0.73
CIITAP33076 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CIITAP33076 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms