Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.21■□□□□ 0.03
COL8A1P27658 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 AC103564.2-201ENST00000432853 1299 ntBASIC15.21■□□□□ 0.03
COL8A1P27658 ATP5G2P4-201ENST00000442175 420 ntBASIC15.21■□□□□ 0.03
COL8A1P27658 FAM207CP-201ENST00000443486 507 ntBASIC15.21■□□□□ 0.03
COL8A1P27658 CRB3P1-201ENST00000449338 276 ntBASIC15.21■□□□□ 0.03
COL8A1P27658 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 KRT8P48-201ENST00000515599 1220 ntBASIC15.21■□□□□ 0.03
COL8A1P27658 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.21■□□□□ 0.03
COL8A1P27658 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.21■□□□□ 0.03
COL8A1P27658 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.21■□□□□ 0.03
COL8A1P27658 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.21■□□□□ 0.03
COL8A1P27658 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.21■□□□□ 0.03
COL8A1P27658 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
COL8A1P27658 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL8A1P27658 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL8A1P27658 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL8A1P27658 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
COL8A1P27658 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL8A1P27658 AL499627.1-201ENST00000569373 2188 ntBASIC15.21■□□□□ 0.02
COL8A1P27658 AC005332.7-201ENST00000614046 2005 ntBASIC15.21■□□□□ 0.02
COL8A1P27658 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.21■□□□□ 0.02
COL8A1P27658 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.2■□□□□ 0.02
COL8A1P27658 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 OR6D1P-202ENST00000641007 5290 ntBASIC15.2■□□□□ 0.02
COL8A1P27658 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.2■□□□□ 0.02
COL8A1P27658 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 AC096633.1-201ENST00000422446 749 ntBASIC15.2■□□□□ 0.02
COL8A1P27658 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 KLF2P3-201ENST00000451977 1087 ntBASIC15.2■□□□□ 0.02
COL8A1P27658 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL8A1P27658 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.2■□□□□ 0.02
COL8A1P27658 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.2■□□□□ 0.02
COL8A1P27658 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
COL8A1P27658 MIR6799-201ENST00000620297 69 ntBASIC15.2■□□□□ 0.02
COL8A1P27658 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.2■□□□□ 0.02
COL8A1P27658 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL8A1P27658 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.2■□□□□ 0.02
COL8A1P27658 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.2■□□□□ 0.02
COL8A1P27658 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL8A1P27658 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.19■□□□□ 0.02
COL8A1P27658 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms