Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 RNU1-129P-201ENST00000384064 167 ntBASIC21.75■■□□□ 1.07
COL5A3P25940 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.75■■□□□ 1.07
COL5A3P25940 AC005034.1-201ENST00000426657 489 ntBASIC21.75■■□□□ 1.07
COL5A3P25940 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 U1.21-201ENST00000580816 167 ntBASIC21.75■■□□□ 1.07
COL5A3P25940 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.75■■□□□ 1.07
COL5A3P25940 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.75■■□□□ 1.07
COL5A3P25940 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.75■■□□□ 1.07
COL5A3P25940 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A3P25940 MEIS3P1-201ENST00000495167 958 ntBASIC21.75■■□□□ 1.07
COL5A3P25940 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A3P25940 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.75■■□□□ 1.07
COL5A3P25940 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL5A3P25940 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
COL5A3P25940 SLC25A24-204ENST00000569674 2357 ntBASIC21.74■■□□□ 1.07
COL5A3P25940 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.74■■□□□ 1.07
COL5A3P25940 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.74■■□□□ 1.07
COL5A3P25940 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 AC109635.5-201ENST00000533593 962 ntBASIC21.74■■□□□ 1.07
COL5A3P25940 LINC01225-203ENST00000563550 1244 ntBASIC21.74■■□□□ 1.07
COL5A3P25940 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
COL5A3P25940 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL5A3P25940 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.74■■□□□ 1.07
COL5A3P25940 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A3P25940 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 AC138028.4-201ENST00000564984 1845 ntBASIC21.73■■□□□ 1.07
COL5A3P25940 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A3P25940 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC21.73■■□□□ 1.07
COL5A3P25940 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
COL5A3P25940 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.73■■□□□ 1.07
COL5A3P25940 TERF1P3-201ENST00000505638 1227 ntBASIC21.73■■□□□ 1.07
COL5A3P25940 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC21.73■■□□□ 1.07
COL5A3P25940 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.73■■□□□ 1.07
COL5A3P25940 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.73■■□□□ 1.07
COL5A3P25940 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.73■■□□□ 1.07
COL5A3P25940 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.73■■□□□ 1.07
COL5A3P25940 LINC02560-201ENST00000596379 459 ntBASIC21.73■■□□□ 1.07
COL5A3P25940 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL5A3P25940 SLC22A20-204ENST00000530038 1673 ntBASIC21.73■■□□□ 1.07
COL5A3P25940 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A3P25940 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A3P25940 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A3P25940 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A3P25940 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.72■■□□□ 1.07
COL5A3P25940 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 SPDYE7P-202ENST00000420373 878 ntBASIC21.72■■□□□ 1.07
COL5A3P25940 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms