Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC090340.1-201ENST00000620778 4980 ntBASIC20.54■□□□□ 0.88
HLA-DOAP06340 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 PI4KAP1-204ENST00000612579 1703 ntBASIC20.53■□□□□ 0.88
HLA-DOAP06340 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 AC018845.2-201ENST00000568326 409 ntBASIC20.53■□□□□ 0.88
HLA-DOAP06340 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.53■□□□□ 0.88
HLA-DOAP06340 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DOAP06340 AL590787.1-201ENST00000568856 1315 ntBASIC20.53■□□□□ 0.88
HLA-DOAP06340 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 AL354751.1-201ENST00000412768 1863 ntBASIC20.52■□□□□ 0.88
HLA-DOAP06340 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 MCCD1P2-201ENST00000423228 335 ntBASIC20.52■□□□□ 0.88
HLA-DOAP06340 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DOAP06340 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.52■□□□□ 0.88
HLA-DOAP06340 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DOAP06340 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DOAP06340 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DOAP06340 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
HLA-DOAP06340 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DOAP06340 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DOAP06340 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 IGLL3P-201ENST00000412472 434 ntBASIC20.5■□□□□ 0.87
HLA-DOAP06340 AC092183.1-201ENST00000469884 875 ntBASIC20.5■□□□□ 0.87
HLA-DOAP06340 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 AC079781.4-201ENST00000641908 219 ntBASIC20.5■□□□□ 0.87
HLA-DOAP06340 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 AC135050.7-201ENST00000624508 2218 ntBASIC20.5■□□□□ 0.87
HLA-DOAP06340 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DOAP06340 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DOAP06340 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DOAP06340 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DOAP06340 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DOAP06340 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms