Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 KRT18P28-201ENST00000453838 1332 ntBASIC17.05■□□□□ 0.32
SDC3O75056 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.05■□□□□ 0.32
SDC3O75056 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 LINC00982-205ENST00000420957 435 ntBASIC17.05■□□□□ 0.32
SDC3O75056 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.05■□□□□ 0.32
SDC3O75056 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SDC3O75056 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.05■□□□□ 0.32
SDC3O75056 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC3O75056 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
SDC3O75056 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SDC3O75056 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.04■□□□□ 0.32
SDC3O75056 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SDC3O75056 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.04■□□□□ 0.32
SDC3O75056 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.04■□□□□ 0.32
SDC3O75056 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.04■□□□□ 0.32
SDC3O75056 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 AC010654.1-201ENST00000615722 808 ntBASIC17.04■□□□□ 0.32
SDC3O75056 AC010507.1-201ENST00000633895 436 ntBASIC17.04■□□□□ 0.32
SDC3O75056 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 AC104581.1-202ENST00000635932 2618 ntBASIC17.04■□□□□ 0.32
SDC3O75056 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SDC3O75056 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SDC3O75056 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC3O75056 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.03■□□□□ 0.32
SDC3O75056 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
SDC3O75056 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SDC3O75056 BCAR1-209ENST00000546196 1340 ntBASIC17.03■□□□□ 0.32
SDC3O75056 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SDC3O75056 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.03■□□□□ 0.32
SDC3O75056 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.03■□□□□ 0.32
SDC3O75056 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.03■□□□□ 0.32
SDC3O75056 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.03■□□□□ 0.32
SDC3O75056 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.03■□□□□ 0.32
SDC3O75056 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.03■□□□□ 0.32
SDC3O75056 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.03■□□□□ 0.32
SDC3O75056 YBX1P5-201ENST00000509441 847 ntBASIC17.03■□□□□ 0.32
SDC3O75056 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.03■□□□□ 0.32
SDC3O75056 C20orf181-201ENST00000623918 480 ntBASIC17.03■□□□□ 0.32
SDC3O75056 AC004877.2-201ENST00000623941 599 ntBASIC17.03■□□□□ 0.32
SDC3O75056 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 LTB4R2-202ENST00000528054 3092 ntBASIC17.03■□□□□ 0.32
SDC3O75056 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SDC3O75056 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SDC3O75056 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDC3O75056 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.02■□□□□ 0.32
SDC3O75056 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SDC3O75056 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms