Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 AC004790.2-201ENST00000623588 572 ntBASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 AC064836.3-201ENST00000607928 673 ntBASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 AC134043.2-201ENST00000624206 2238 ntBASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMIM28A0A1B0GU29 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 RNA5SP416-201ENST00000516838 111 ntBASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMIM28A0A1B0GU29 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 CRYGEP-201ENST00000412192 528 ntBASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 PRSS29P-201ENST00000440800 595 ntBASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 VN2R19P-201ENST00000442399 1052 ntBASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 KRT18P2-201ENST00000447938 1258 ntBASIC18.65■□□□□ 0.58
SMIM28A0A1B0GU29 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms