Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 PP12613-201ENST00000424958 2230 ntBASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A3BPQ9Y5P4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 KRT18P67-201ENST00000432816 1264 ntBASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 AC064862.7-201ENST00000604520 867 ntBASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.56■□□□□ 0.72
COL4A3BPQ9Y5P4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 AC139713.2-201ENST00000641328 2723 ntBASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 AC103564.2-201ENST00000432853 1299 ntBASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SCARNA2-201ENST00000458748 420 ntBASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 AC002558.1-201ENST00000488906 803 ntBASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms