Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 ZNF890P-202ENST00000530367 1156 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 AC109635.5-201ENST00000533593 962 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 MIR4722-201ENST00000578292 60 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 BRWD1P1-201ENST00000401091 371 ntBASIC17.52■□□□□ 0.4
TTC28Q96AY4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 RNA5SP412-201ENST00000516234 123 ntBASIC17.52■□□□□ 0.4
TTC28Q96AY4 AC107918.2-201ENST00000530817 355 ntBASIC17.52■□□□□ 0.4
TTC28Q96AY4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 AC004840.1-201ENST00000636359 365 ntBASIC17.52■□□□□ 0.4
TTC28Q96AY4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TTC28Q96AY4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.52■□□□□ 0.4
TTC28Q96AY4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TTC28Q96AY4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TTC28Q96AY4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TTC28Q96AY4 HMGA1P7-201ENST00000406908 502 ntBASIC17.52■□□□□ 0.39
TTC28Q96AY4 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TTC28Q96AY4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.52■□□□□ 0.39
TTC28Q96AY4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 AC016629.1-201ENST00000596579 586 ntBASIC17.51■□□□□ 0.39
TTC28Q96AY4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 RPSAP52-203ENST00000622976 1023 ntBASIC17.51■□□□□ 0.39
TTC28Q96AY4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TTC28Q96AY4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TTC28Q96AY4 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 AL080243.2-201ENST00000418783 582 ntBASIC17.5■□□□□ 0.39
TTC28Q96AY4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 NUS1P3-201ENST00000423502 862 ntBASIC17.5■□□□□ 0.39
TTC28Q96AY4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TTC28Q96AY4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.5■□□□□ 0.39
TTC28Q96AY4 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms