Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 AP000997.3-201ENST00000623333 2250 ntBASIC17.49■□□□□ 0.39
HMGB4Q8WW32 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 AP002472.1-201ENST00000577490 586 ntBASIC17.49■□□□□ 0.39
HMGB4Q8WW32 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 PI4KAP1-204ENST00000612579 1703 ntBASIC17.49■□□□□ 0.39
HMGB4Q8WW32 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB4Q8WW32 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AC025580.3-201ENST00000617932 1424 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 MYCLP1-201ENST00000372451 1075 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 FAM58CP-201ENST00000435741 640 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AC002558.1-201ENST00000488906 803 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AL031432.2-201ENST00000566714 459 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AL928711.1-201ENST00000570165 459 ntBASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB4Q8WW32 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 OR7E47P-204ENST00000575924 449 ntBASIC17.47■□□□□ 0.39
HMGB4Q8WW32 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 BX323043.1-201ENST00000641006 1765 ntBASIC17.47■□□□□ 0.39
HMGB4Q8WW32 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB4Q8WW32 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms