Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 IGHV3-72-202ENST00000621503 303 ntBASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 TSSK5P-201ENST00000423978 907 ntBASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 AC019129.2-201ENST00000609837 1235 ntBASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 AL161645.1-201ENST00000622716 1255 ntBASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 AC073592.8-201ENST00000624126 511 ntBASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC1BQ8NDV3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 PARP8-206ENST00000503665 572 ntTSL 4 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 AC068587.10-201ENST00000641210 219 ntBASIC20.58■□□□□ 0.89
SMC1BQ8NDV3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.58■□□□□ 0.88
SMC1BQ8NDV3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 GNAS-203ENST00000306120 1878 ntBASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 INE1-201ENST00000456273 945 ntBASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 AC109462.3-201ENST00000573934 613 ntBASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 AC140912.1-201ENST00000577171 1054 ntBASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC1BQ8NDV3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 ALG1L8P-201ENST00000533887 760 ntBASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 AC106886.1-201ENST00000568660 600 ntBASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms