Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 AP002414.3-201ENST00000589352 1468 ntBASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 AC011467.2-201ENST00000598425 242 ntBASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 AC008735.5-201ENST00000623544 497 ntBASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SH3RF1Q7Z6J0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 AC004832.2-201ENST00000426397 482 ntBASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 DDX43P3-201ENST00000441064 443 ntBASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 AC009154.2-201ENST00000621177 724 ntBASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20■□□□□ 0.79
SH3RF1Q7Z6J0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 RNA5SP416-201ENST00000516838 111 ntBASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.99■□□□□ 0.79
SH3RF1Q7Z6J0 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 LINC01451-201ENST00000623792 534 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms