Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RNFT1Q5M7Z0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RNFT1Q5M7Z0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.1
RNFT1Q5M7Z0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RNFT1Q5M7Z0 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
RNFT1Q5M7Z0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 AP002414.1-201ENST00000391405 1147 ntBASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNFT1Q5M7Z0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 MRPL20P1-201ENST00000400819 433 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 ALG1L5P-201ENST00000482043 771 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 NIFKP4-201ENST00000567275 1192 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AC010654.1-201ENST00000615722 808 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AC012183.1-201ENST00000625197 499 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AC002310.6-201ENST00000624451 1377 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AL135999.2-201ENST00000622438 1686 ntBASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNFT1Q5M7Z0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 AL590787.1-201ENST00000568856 1315 ntBASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.68■□□□□ 0.1
RNFT1Q5M7Z0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms