Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 BCL2-203ENST00000589955 5011 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 MIR149-201ENST00000384879 89 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 HLA-V-201ENST00000429037 534 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AC068472.1-201ENST00000474589 881 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AC005498.2-205ENST00000593218 784 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AC090164.3-201ENST00000610780 2143 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 AC009102.3-201ENST00000623118 1491 ntBASIC16.8■□□□□ 0.28
COL28A1Q2UY09 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL28A1Q2UY09 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AC018845.2-201ENST00000568326 409 ntBASIC16.79■□□□□ 0.28
COL28A1Q2UY09 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AP000867.4-201ENST00000641616 219 ntBASIC16.79■□□□□ 0.28
COL28A1Q2UY09 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 AC009113.1-201ENST00000570267 2443 ntBASIC16.79■□□□□ 0.28
COL28A1Q2UY09 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL28A1Q2UY09 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PRORSD1P-202ENST00000563365 2154 ntBASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.78■□□□□ 0.28
COL28A1Q2UY09 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms