Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
H3F3AP84243 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.65■□□□□ 0.1
H3F3AP84243 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
H3F3AP84243 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 RBM17P3-201ENST00000417687 1192 ntBASIC15.65■□□□□ 0.1
H3F3AP84243 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.65■□□□□ 0.1
H3F3AP84243 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.65■□□□□ 0.1
H3F3AP84243 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 REXO1L6P-202ENST00000619970 1078 ntBASIC15.65■□□□□ 0.1
H3F3AP84243 AC073592.5-201ENST00000624854 528 ntBASIC15.65■□□□□ 0.1
H3F3AP84243 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 SIGLEC16-201ENST00000599858 1437 ntBASIC15.65■□□□□ 0.1
H3F3AP84243 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.65■□□□□ 0.1
H3F3AP84243 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
H3F3AP84243 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
H3F3AP84243 PKD1P1-201ENST00000458669 6805 ntBASIC15.65■□□□□ 0.1
H3F3AP84243 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.65■□□□□ 0.1
H3F3AP84243 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
H3F3AP84243 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
H3F3AP84243 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 AC003669.1-201ENST00000334569 611 ntBASIC15.64■□□□□ 0.09
H3F3AP84243 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.64■□□□□ 0.09
H3F3AP84243 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
H3F3AP84243 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.64■□□□□ 0.09
H3F3AP84243 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 UNC93B7-201ENST00000509439 705 ntBASIC15.64■□□□□ 0.09
H3F3AP84243 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
H3F3AP84243 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.64■□□□□ 0.09
H3F3AP84243 LINC01711-201ENST00000598340 967 ntBASIC15.64■□□□□ 0.09
H3F3AP84243 AC009336.1-201ENST00000608941 1553 ntBASIC15.64■□□□□ 0.09
H3F3AP84243 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
H3F3AP84243 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
H3F3AP84243 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
H3F3AP84243 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 OR6D1P-202ENST00000641007 5290 ntBASIC15.63■□□□□ 0.09
H3F3AP84243 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 PP12613-201ENST00000424958 2230 ntBASIC15.63■□□□□ 0.09
H3F3AP84243 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.63■□□□□ 0.09
H3F3AP84243 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
H3F3AP84243 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
H3F3AP84243 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.63■□□□□ 0.09
H3F3AP84243 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.63■□□□□ 0.09
H3F3AP84243 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
H3F3AP84243 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.63■□□□□ 0.09
H3F3AP84243 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
H3F3AP84243 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms