Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL138781.1-201ENST00000566567 1274 ntBASIC13.19□□□□□ -0.3
FOXA3P55318 MIR3180-4-201ENST00000582223 153 ntBASIC13.19□□□□□ -0.3
FOXA3P55318 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 PFKL-212ENST00000628044 129 ntTSL 3 BASIC13.19□□□□□ -0.3
FOXA3P55318 ABBA01031674.1-201ENST00000635145 728 ntBASIC13.19□□□□□ -0.3
FOXA3P55318 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.19□□□□□ -0.3
FOXA3P55318 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 AC026691.1-201ENST00000602502 2017 ntBASIC13.18□□□□□ -0.3
FOXA3P55318 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA3P55318 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.18□□□□□ -0.3
FOXA3P55318 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA3P55318 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA3P55318 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 RARRES2P10-201ENST00000564312 460 ntBASIC13.18□□□□□ -0.3
FOXA3P55318 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC13.18□□□□□ -0.3
FOXA3P55318 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC13.18□□□□□ -0.3
FOXA3P55318 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
FOXA3P55318 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 AC116353.5-201ENST00000638148 1699 ntBASIC13.18□□□□□ -0.3
FOXA3P55318 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA3P55318 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA3P55318 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
FOXA3P55318 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.17□□□□□ -0.3
FOXA3P55318 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC13.17□□□□□ -0.3
FOXA3P55318 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC13.17□□□□□ -0.3
FOXA3P55318 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms