Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CTCFP49711 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CTCFP49711 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
CTCFP49711 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CTCFP49711 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 AC098614.1-201ENST00000368528 745 ntBASIC20.16■□□□□ 0.82
CTCFP49711 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 AC096633.1-201ENST00000422446 749 ntBASIC20.16■□□□□ 0.82
CTCFP49711 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.16■□□□□ 0.82
CTCFP49711 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 AC026150.2-201ENST00000564693 1156 ntBASIC20.16■□□□□ 0.82
CTCFP49711 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.16■□□□□ 0.82
CTCFP49711 TP53TG3HP-202ENST00000569755 579 ntBASIC20.16■□□□□ 0.82
CTCFP49711 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.16■□□□□ 0.82
CTCFP49711 AC099522.2-201ENST00000607001 744 ntBASIC20.16■□□□□ 0.82
CTCFP49711 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.16■□□□□ 0.82
CTCFP49711 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.16■□□□□ 0.82
CTCFP49711 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 AC148477.5-201ENST00000625164 1645 ntBASIC20.16■□□□□ 0.82
CTCFP49711 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTCFP49711 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTCFP49711 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.15■□□□□ 0.82
CTCFP49711 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.15■□□□□ 0.82
CTCFP49711 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.15■□□□□ 0.82
CTCFP49711 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CTCFP49711 AC079776.1-201ENST00000401540 1152 ntBASIC20.15■□□□□ 0.82
CTCFP49711 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 AC092580.3-201ENST00000430932 139 ntBASIC20.15■□□□□ 0.82
CTCFP49711 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.15■□□□□ 0.82
CTCFP49711 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CTCFP49711 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.15■□□□□ 0.82
CTCFP49711 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.15■□□□□ 0.82
CTCFP49711 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
CTCFP49711 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.15■□□□□ 0.82
CTCFP49711 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
CTCFP49711 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CTCFP49711 SDHAP2-201ENST00000455183 2001 ntBASIC20.15■□□□□ 0.82
CTCFP49711 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTCFP49711 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTCFP49711 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTCFP49711 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTCFP49711 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTCFP49711 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
CTCFP49711 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTCFP49711 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.82
CTCFP49711 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.14■□□□□ 0.81
CTCFP49711 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.14■□□□□ 0.81
CTCFP49711 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.14■□□□□ 0.81
CTCFP49711 AL513480.1-201ENST00000451731 511 ntBASIC20.14■□□□□ 0.81
CTCFP49711 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CTCFP49711 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.14■□□□□ 0.81
CTCFP49711 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.14■□□□□ 0.81
CTCFP49711 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.14■□□□□ 0.81
CTCFP49711 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CTCFP49711 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CTCFP49711 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTCFP49711 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.13■□□□□ 0.81
CTCFP49711 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 AC010460.3-201ENST00000511359 1579 ntBASIC20.13■□□□□ 0.81
CTCFP49711 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms