Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
PTPN4P29074 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
PTPN4P29074 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN4P29074 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
PTPN4P29074 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
PTPN4P29074 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.6■□□□□ 0.41
PTPN4P29074 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PTPN4P29074 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 SEC1P-202ENST00000473944 940 ntBASIC17.6■□□□□ 0.41
PTPN4P29074 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 AL121894.2-201ENST00000602977 491 ntBASIC17.6■□□□□ 0.41
PTPN4P29074 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PTPN4P29074 AC112497.1-201ENST00000624824 639 ntBASIC17.6■□□□□ 0.41
PTPN4P29074 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.6■□□□□ 0.41
PTPN4P29074 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 RCC2P3-201ENST00000418112 1537 ntBASIC17.6■□□□□ 0.41
PTPN4P29074 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN4P29074 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN4P29074 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PTPN4P29074 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.59■□□□□ 0.41
PTPN4P29074 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.59■□□□□ 0.41
PTPN4P29074 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.59■□□□□ 0.41
PTPN4P29074 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PTPN4P29074 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PTPN4P29074 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.59■□□□□ 0.41
PTPN4P29074 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.59■□□□□ 0.41
PTPN4P29074 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.59■□□□□ 0.41
PTPN4P29074 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.59■□□□□ 0.41
PTPN4P29074 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PTPN4P29074 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PTPN4P29074 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN4P29074 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.58■□□□□ 0.41
PTPN4P29074 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
PTPN4P29074 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN4P29074 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN4P29074 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.58■□□□□ 0.41
PTPN4P29074 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN4P29074 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms