Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.67■□□□□ 0.26
SDC1P18827 IGHV3-52-201ENST00000519770 353 ntBASIC16.67■□□□□ 0.26
SDC1P18827 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.67■□□□□ 0.26
SDC1P18827 AL136038.3-201ENST00000561909 1096 ntBASIC16.67■□□□□ 0.26
SDC1P18827 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.67■□□□□ 0.26
SDC1P18827 AC090616.6-201ENST00000582640 721 ntBASIC16.67■□□□□ 0.26
SDC1P18827 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.67■□□□□ 0.26
SDC1P18827 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SDC1P18827 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.67■□□□□ 0.26
SDC1P18827 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SDC1P18827 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC1P18827 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 AC106886.4-201ENST00000623557 2502 ntBASIC16.66■□□□□ 0.26
SDC1P18827 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SDC1P18827 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.66■□□□□ 0.26
SDC1P18827 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 AC122714.2-201ENST00000502787 707 ntBASIC16.66■□□□□ 0.26
SDC1P18827 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.66■□□□□ 0.26
SDC1P18827 LINC02012-201ENST00000608206 1725 ntBASIC16.66■□□□□ 0.26
SDC1P18827 IGHV3-41-201ENST00000613121 348 ntBASIC16.66■□□□□ 0.26
SDC1P18827 AC093525.9-201ENST00000624961 1746 ntBASIC16.66■□□□□ 0.26
SDC1P18827 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SDC1P18827 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC1P18827 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 AL049757.1-201ENST00000616842 1596 ntBASIC16.65■□□□□ 0.26
SDC1P18827 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.65■□□□□ 0.26
SDC1P18827 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC1P18827 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC1P18827 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.65■□□□□ 0.26
SDC1P18827 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 KRT8P26-201ENST00000534154 1276 ntBASIC16.65■□□□□ 0.26
SDC1P18827 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC1P18827 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC1P18827 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.65■□□□□ 0.26
SDC1P18827 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC1P18827 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC1P18827 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SDC1P18827 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC1P18827 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms