Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.08■□□□□ 0.32
SDC3O75056 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SDC3O75056 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SDC3O75056 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC3O75056 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC3O75056 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 AC009336.1-201ENST00000608941 1553 ntBASIC17.07■□□□□ 0.32
SDC3O75056 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.07■□□□□ 0.32
SDC3O75056 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.07■□□□□ 0.32
SDC3O75056 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 HTR5BP-201ENST00000430851 1154 ntBASIC17.07■□□□□ 0.32
SDC3O75056 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 AP006288.1-201ENST00000446065 395 ntBASIC17.07■□□□□ 0.32
SDC3O75056 SNHG9-202ENST00000564014 471 ntBASIC17.07■□□□□ 0.32
SDC3O75056 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SDC3O75056 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC3O75056 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC3O75056 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.07■□□□□ 0.32
SDC3O75056 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC3O75056 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC3O75056 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC3O75056 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC3O75056 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC3O75056 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 MRPL20P1-201ENST00000400819 433 ntBASIC17.06■□□□□ 0.32
SDC3O75056 IGLL3P-201ENST00000412472 434 ntBASIC17.06■□□□□ 0.32
SDC3O75056 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.06■□□□□ 0.32
SDC3O75056 METTL21AP1-201ENST00000438852 635 ntBASIC17.06■□□□□ 0.32
SDC3O75056 PRSS29P-201ENST00000440800 595 ntBASIC17.06■□□□□ 0.32
SDC3O75056 DDX43P3-201ENST00000441064 443 ntBASIC17.06■□□□□ 0.32
SDC3O75056 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
SDC3O75056 AL805961.1-202ENST00000641562 540 ntBASIC17.06■□□□□ 0.32
SDC3O75056 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.06■□□□□ 0.32
SDC3O75056 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC3O75056 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC3O75056 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms