Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHMP2AO43633 AC003669.1-201ENST00000334569 611 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 AL020989.1-201ENST00000422979 469 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 AC018712.1-201ENST00000455767 687 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 AL662844.1-201ENST00000546340 181 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CHMP2AO43633 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.69■□□□□ 0.74
CHMP2AO43633 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP2AO43633 AL049840.3-201ENST00000602669 611 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 AC064862.7-201ENST00000604520 867 ntBASIC19.69■□□□□ 0.74
CHMP2AO43633 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CHMP2AO43633 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CHMP2AO43633 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP2AO43633 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP2AO43633 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP2AO43633 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.68■□□□□ 0.74
CHMP2AO43633 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 AL031284.1-201ENST00000419297 478 ntBASIC19.68■□□□□ 0.74
CHMP2AO43633 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP2AO43633 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.68■□□□□ 0.74
CHMP2AO43633 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.68■□□□□ 0.74
CHMP2AO43633 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP2AO43633 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 HLA-A-201ENST00000376802 1334 ntBASIC19.68■□□□□ 0.74
CHMP2AO43633 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP2AO43633 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP2AO43633 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.68■□□□□ 0.74
CHMP2AO43633 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP2AO43633 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP2AO43633 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP2AO43633 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CHMP2AO43633 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP2AO43633 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP2AO43633 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP2AO43633 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP2AO43633 AP001005.1-201ENST00000571755 1248 ntBASIC19.67■□□□□ 0.74
CHMP2AO43633 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP2AO43633 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 AC073592.4-201ENST00000623827 446 ntBASIC19.67■□□□□ 0.74
CHMP2AO43633 AL022326.1-202ENST00000641533 845 ntBASIC19.67■□□□□ 0.74
CHMP2AO43633 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP2AO43633 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CHMP2AO43633 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP2AO43633 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.66■□□□□ 0.74
CHMP2AO43633 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP2AO43633 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP2AO43633 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP2AO43633 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CHMP2AO43633 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CHMP2AO43633 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP2AO43633 MIR7706-201ENST00000613747 67 ntBASIC19.66■□□□□ 0.74
CHMP2AO43633 LINC01451-201ENST00000623792 534 ntBASIC19.66■□□□□ 0.74
CHMP2AO43633 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
CHMP2AO43633 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP2AO43633 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP2AO43633 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP2AO43633 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 SIGLEC16-201ENST00000599858 1437 ntBASIC19.66■□□□□ 0.74
CHMP2AO43633 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
CHMP2AO43633 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms